var polyOptions = {

  fillColor:'#000000',

  strokeColor:'#000000', 

  strokeWidth: 2, 

  fillOpacity: 0.3

};

​

var bounds1 = [

  [

    [55.71661243639541, 37.45460571289062],

    [55.82344443031646, 37.542496337890604],

    [55.691797789925474, 37.59330810546872]

  ], []

];

var bounds2 = [

  [

    [55.82344443031646, 37.542496337890604],

    [55.691797789925474, 37.59330810546872],

    [55.701880648597864, 37.771835937499986],

    [55.81261980047947, 37.78007568359372]

  ], []

];

var polygon1;

var polygon2;

​

var map;

ymaps.ready(init);

​

function init () {

  map = new ymaps.Map('map', {

    center:[55.76, 37.64],

    zoom:10

  });

  map.events.add(['click'], function(e){

    console.log(e.get('coords'));

  });

  polygon1 = new ymaps.Polygon(bounds1, {}, polyOptions);

  polygon2 = new ymaps.Polygon(bounds2, {}, polyOptions);

  map.geoObjects.add(polygon1);

  map.geoObjects.add(polygon2);

  objects = ymaps.geoQuery(polygon1);

  var objectsInsideCircle = objects.searchIntersect(polygon2);

  objectsInsideCircle.setOptions('fillColor', '#FF0000');

}